Package: BioCircos 0.3.4

Loan Vulliard

BioCircos: Interactive Circular Visualization of Genomic Data using 'htmlwidgets' and 'BioCircos.js'

Implement in 'R' interactive Circos-like visualizations of genomic data, to map information such as genetic variants, genomic fusions and aberrations to a circular genome, as proposed by the 'JavaScript' library 'BioCircos.js', based on the 'JQuery' and 'D3' technologies. The output is by default displayed in stand-alone HTML documents or in the 'RStudio' viewer pane. Moreover it can be integrated in 'R Markdown' documents and 'Shiny' applications.

Authors:Loan Vulliard [trl, cre], Xiaowei Chen [aut], Ya Cui [aut]

BioCircos_0.3.4.tar.gz
BioCircos_0.3.4.zip(r-4.5)BioCircos_0.3.4.zip(r-4.4)BioCircos_0.3.4.zip(r-4.3)
BioCircos_0.3.4.tgz(r-4.4-any)BioCircos_0.3.4.tgz(r-4.3-any)
BioCircos_0.3.4.tar.gz(r-4.5-noble)BioCircos_0.3.4.tar.gz(r-4.4-noble)
BioCircos_0.3.4.tgz(r-4.4-emscripten)BioCircos_0.3.4.tgz(r-4.3-emscripten)
BioCircos.pdf |BioCircos.html✨
BioCircos/json (API)

# Install 'BioCircos' in R:
install.packages('BioCircos', repos = c('https://lvulliard.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/lvulliard/biocircos.r/issues

On CRAN:

biocircosbioinformaticscircoscircos-graphshtmlwidgetsshiny

5.99 score 37 stars 53 scripts 236 downloads 13 exports 30 dependencies

Last updated 6 years agofrom:99db76448f. Checks:OK: 1 WARNING: 6. Indexed: yes.

TargetResultDate
Doc / VignettesOKOct 29 2024
R-4.5-winWARNINGOct 29 2024
R-4.5-linuxWARNINGOct 29 2024
R-4.4-winWARNINGOct 29 2024
R-4.4-macWARNINGOct 29 2024
R-4.3-winWARNINGOct 29 2024
R-4.3-macWARNINGOct 29 2024

Exports:BioCircosBioCircosArcTrackBioCircosBackgroundTrackBioCircosBarTrackBioCircosCNVTrackBioCircosHeatmapTrackBioCircosLineTrackBioCircosLinkTrackBioCircosOutputBioCircosSNPTrackBioCircosTextTrackBioCircosTracklistrenderBioCircos

Dependencies:base64encbslibcachemclidigestevaluatefastmapfontawesomefsgluehighrhtmltoolshtmlwidgetsjquerylibjsonliteknitrlifecyclememoisemimeplyrR6rappdirsRColorBrewerRcpprlangrmarkdownsasstinytexxfunyaml

BioCircos: Generating circular multi-track plots

Loan Vulliard

Rendered fromBioCircos.Rmdusingknitr::rmarkdownon Oct 29 2024.

Last update: 2019-05-03
Started: 2017-12-18