Package: BioCircos 0.3.4

Loan Vulliard

BioCircos: Interactive Circular Visualization of Genomic Data using 'htmlwidgets' and 'BioCircos.js'

Implement in 'R' interactive Circos-like visualizations of genomic data, to map information such as genetic variants, genomic fusions and aberrations to a circular genome, as proposed by the 'JavaScript' library 'BioCircos.js', based on the 'JQuery' and 'D3' technologies. The output is by default displayed in stand-alone HTML documents or in the 'RStudio' viewer pane. Moreover it can be integrated in 'R Markdown' documents and 'Shiny' applications.

Authors:Loan Vulliard [trl, cre], Xiaowei Chen [aut], Ya Cui [aut]

BioCircos_0.3.4.tar.gz
BioCircos_0.3.4.zip(r-4.5)BioCircos_0.3.4.zip(r-4.4)BioCircos_0.3.4.zip(r-4.3)
BioCircos_0.3.4.tgz(r-4.5-any)BioCircos_0.3.4.tgz(r-4.4-any)BioCircos_0.3.4.tgz(r-4.3-any)
BioCircos_0.3.4.tar.gz(r-4.5-noble)BioCircos_0.3.4.tar.gz(r-4.4-noble)
BioCircos_0.3.4.tgz(r-4.4-emscripten)BioCircos_0.3.4.tgz(r-4.3-emscripten)
BioCircos.pdf |BioCircos.html✨
BioCircos/json (API)

# Install 'BioCircos' in R:
install.packages('BioCircos', repos = c('https://lvulliard.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/lvulliard/biocircos.r/issues

On CRAN:

Conda:

biocircosbioinformaticscircoscircos-graphshtmlwidgetsshiny

6.98 score 37 stars 58 scripts 354 downloads 9 mentions 13 exports 30 dependencies

Last updated 6 years agofrom:99db76448f. Checks:1 OK, 8 WARNING. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKMar 28 2025
R-4.5-winWARNINGMar 28 2025
R-4.5-macWARNINGMar 28 2025
R-4.5-linuxWARNINGMar 28 2025
R-4.4-winWARNINGMar 28 2025
R-4.4-macWARNINGMar 28 2025
R-4.4-linuxWARNINGMar 28 2025
R-4.3-winWARNINGMar 28 2025
R-4.3-macWARNINGMar 28 2025

Exports:BioCircosBioCircosArcTrackBioCircosBackgroundTrackBioCircosBarTrackBioCircosCNVTrackBioCircosHeatmapTrackBioCircosLineTrackBioCircosLinkTrackBioCircosOutputBioCircosSNPTrackBioCircosTextTrackBioCircosTracklistrenderBioCircos

Dependencies:base64encbslibcachemclidigestevaluatefastmapfontawesomefsgluehighrhtmltoolshtmlwidgetsjquerylibjsonliteknitrlifecyclememoisemimeplyrR6rappdirsRColorBrewerRcpprlangrmarkdownsasstinytexxfunyaml

BioCircos: Generating circular multi-track plots

Loan Vulliard

Rendered fromBioCircos.Rmdusingknitr::rmarkdownon Mar 28 2025.

Last update: 2019-05-03
Started: 2017-12-18